Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Others
Cell type
Aska
NA
NA

Attributes by original data submitter

Sample

source_name
Aska (SS)
cell line
Aska (SS)
shRNA
shSSX
antibody
anti-RNAPolII
antibody vendor
Diagenode
antibody catalog
C15200004

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immunoprecipitation (ChIP) experiments were performed per standard protocols (Millipore, Billerica, MA) with minor modifications. Briefly, 10M cells were crosslinked with 1% formaldehyde for 10 min at 37 °C. This reaction was subsequently quenched with 0.125M glycine. All library prep and sequencing were 75bp single end on Illuminia Nextseq 500

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
35350106
Reads aligned (%)
96.1
Duplicates removed (%)
19.9
Number of peaks
9011 (qval < 1E-05)

hg19

Number of total reads
35350106
Reads aligned (%)
95.3
Duplicates removed (%)
20.5
Number of peaks
9027 (qval < 1E-05)

Base call quality data from DBCLS SRA