Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Larvae
Cell type
3rd instar brain
NA
NA

Attributes by original data submitter

Sample

source_name
3rd instar larval brains
age
3rd instar-wandering
treatment
Hand Dissections
genotype
ELAV-gal4;Tub-gal80TS/UAS-grh

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
The entire brain was dissected from 3rd instar wandering larvae. The brains were immediately lysed and ATAC-seq was performed Tn5 and nextera library prep

Sequencing Platform

instrument_model
Illumina HiSeq 4000

dm6

Number of total reads
9129502
Reads aligned (%)
40.9
Duplicates removed (%)
24.5
Number of peaks
12415 (qval < 1E-05)

dm3

Number of total reads
9129502
Reads aligned (%)
41.0
Duplicates removed (%)
24.0
Number of peaks
11717 (qval < 1E-05)

Base call quality data from DBCLS SRA