SRX346169
GSM1225097: pol II ChIP-seq TAC-hypertrophied; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Cardiovascular
Cell type
Heart
MeSH Description
The hollow, muscular organ that maintains the circulation of the blood.

Attributes by original data submitter

Sample

source_name
whole heart
pathology/age
Hypertrophied heart /12wk old mice subjected to Transaortic coarctation (TAC) for 4days
strain
C57BL/6
antibody
anti-pol II CTD (abcam ab5095)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP, Library construction and Illumina sequencing performed by Active Motif

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
30655989
Reads aligned (%)
96.5
Duplicates removed (%)
40.7
Number of peaks
6131 (qval < 1E-05)

mm9

Number of total reads
30655989
Reads aligned (%)
96.5
Duplicates removed (%)
40.8
Number of peaks
6090 (qval < 1E-05)

Base call quality data from DBCLS SRA