ChIP-Atlas: SRX3451546

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Unclassified
Antigen: Unclassified

Cell type

Cell type Class: Pluripotent stem cell
Cell type: ES cells
NA: NA

Attributes by original data submitter

Sample

source_name: E14 Embryonic stem cells
strain: 129/Ola

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit (Part# 0801-0303).

Sequencing Platform

instrument_model: Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 60762279
Reads aligned (%): 87.7
Duplicates removed (%): 14.0
Number of peaks: 461 (qval < 1E-05)

mm9

Number of total reads: 60762279
Reads aligned (%): 87.4
Duplicates removed (%): 14.0
Number of peaks: 564 (qval < 1E-05)

Base call quality data from DBCLS SRA