SRX3451540
GSM2878961: shNsd1.1 ChIP-rx H3K27me3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
E14 Embryonic stem cells
strain
129/Ola
spike-in reference organism
Drosophila melanogaster
spike-in cell line
S2
spike-in mix ratio
20:1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit (Part# 0801-0303).

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25976291
Reads aligned (%)
88.6
Duplicates removed (%)
7.4
Number of peaks
221 (qval < 1E-05)

mm9

Number of total reads
25976291
Reads aligned (%)
88.4
Duplicates removed (%)
7.5
Number of peaks
236 (qval < 1E-05)

Base call quality data from DBCLS SRA