Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD8 lymphocyte
cell type
CD8+
strain
BALB/c
treatment
stimulated and phenelzine

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
DNA were transposed by using transposase Tn5 followed by purification using Qiagen MinElute PCR purification kit. Transposed DNA fragments were amplified by PCR with custom Nextera PCR primers contains barcode, followed by purification using Qiagen MinElute PCR purification kit.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
42626431
Reads aligned (%)
93.9
Duplicates removed (%)
15.5
Number of peaks
1751 (qval < 1E-05)

mm9

Number of total reads
42626431
Reads aligned (%)
93.7
Duplicates removed (%)
15.7
Number of peaks
1744 (qval < 1E-05)

Base call quality data from DBCLS SRA