Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Neural
Cell type
Retina
MeSH Description
The ten-layered nervous tissue membrane of the eye. It is continuous with the OPTIC NERVE and receives images of external objects and transmits visual impulses to the brain. Its outer surface is in contact with the CHOROID and the inner surface with the VITREOUS BODY. The outer-most layer is pigmented, whereas the inner nine layers are transparent.

Attributes by original data submitter

Sample

strain
C57Bl6/J
age
P14
sex
pooled male and female
tissue
Retina
sample_type
ATAC-seq
Replicate
biological replicate 2

Sequenced DNA Library

library_name
ATAC_WTb
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
8176851
Reads aligned (%)
95.1
Duplicates removed (%)
17.4
Number of peaks
22736 (qval < 1E-05)

mm9

Number of total reads
8176851
Reads aligned (%)
95.0
Duplicates removed (%)
17.5
Number of peaks
22738 (qval < 1E-05)

Base call quality data from DBCLS SRA