Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Neural
Cell type
Retina
MeSH Description
The ten-layered nervous tissue membrane of the eye. It is continuous with the OPTIC NERVE and receives images of external objects and transmits visual impulses to the brain. Its outer surface is in contact with the CHOROID and the inner surface with the VITREOUS BODY. The outer-most layer is pigmented, whereas the inner nine layers are transparent.

Attributes by original data submitter

Sample

strain
Crx-/-
age
P14
sex
pooled male and female
tissue
Retina
sample_type
ChIP Input
Replicate
biological replicate 2

Sequenced DNA Library

library_name
ChIP_Input_CRX2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
20485341
Reads aligned (%)
97.7
Duplicates removed (%)
6.7
Number of peaks
370 (qval < 1E-05)

mm9

Number of total reads
20485341
Reads aligned (%)
97.5
Duplicates removed (%)
6.7
Number of peaks
387 (qval < 1E-05)

Base call quality data from DBCLS SRA