Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

strain
CD1
age
8 weeks
sex
female
tissue
liver
treatment
untreated rep 1
Replicate
replicate-2

Sequenced DNA Library

library_name
Dnaseseq-CTL-rep-2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
13023240
Reads aligned (%)
89.5
Duplicates removed (%)
10.8
Number of peaks
2619 (qval < 1E-05)

mm9

Number of total reads
13023240
Reads aligned (%)
89.5
Duplicates removed (%)
10.9
Number of peaks
2588 (qval < 1E-05)

Base call quality data from DBCLS SRA