Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

strain
CD1
age
8 weeks
sex
female
tissue
liver
treatment
untreated rep 2
Replicate
replicate-2
Antiserum
HNF4a

Sequenced DNA Library

library_name
ChIPseq-HNF4a-CTL-rep-2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
28445461
Reads aligned (%)
91.2
Duplicates removed (%)
17.1
Number of peaks
4486 (qval < 1E-05)

mm9

Number of total reads
28445461
Reads aligned (%)
91.0
Duplicates removed (%)
17.2
Number of peaks
4507 (qval < 1E-05)

Base call quality data from DBCLS SRA