SRX3434696
AR-ChIP-LNCaP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

isolate
NA
age
58
biomaterial_provider
ATCC
sex
male
tissue
Prostate
cell_line
LNCaP
cell_type
Epithelial
disease
Prostate carcinoma

Sequenced DNA Library

library_name
AR_siLINC00844_1_ETOH_R2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9610982
Reads aligned (%)
91.1
Duplicates removed (%)
9.6
Number of peaks
310 (qval < 1E-05)

hg19

Number of total reads
9610982
Reads aligned (%)
90.5
Duplicates removed (%)
10.4
Number of peaks
374 (qval < 1E-05)

Base call quality data from DBCLS SRA