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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: LNCAP
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX3434692
AR-ChIP-LNCaP
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
isolate
NA
age
51
biomaterial_provider
ATCC
sex
male
tissue
Prostate
cell_line
LNCaP
cell_type
Epithelial
disease
Prostate carcinoma
Sequenced DNA Library
library_name
AR_NC_DHT_R1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
16979477
Reads aligned (%)
96.2
Duplicates removed (%)
5.0
Number of peaks
13102 (qval < 1E-05)
hg19
Number of total reads
16979477
Reads aligned (%)
95.5
Duplicates removed (%)
6.2
Number of peaks
13069 (qval < 1E-05)
Base call quality data from
DBCLS SRA