SRX3433203
GSM2870587: IP: Gcn4 (+SM) Experiment 3 [AGH24 03]; Saccharomyces cerevisiae; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GCN4

Cell type

Cell type Class
Yeast strain
Cell type
F731
NA
NA

Attributes by original data submitter

Sample

source_name
IP: Gcn4 (+SM) experiment
strain
F731
chip antibody
Affinity purified Gcn4 antibody
chip antibody vendor
Covance

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Formaldehyde-fixed and sonicated The DNA was repaired using the DNA repair kit from New England Biolabs. The repaired DNA was processed for paired-end sequencing according to the Illumina protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 3000

Where can I get the processing logs?

Read processing pipeline log

sacCer3

Number of total reads
18090395
Reads aligned (%)
53.6
Duplicates removed (%)
94.8
Number of peaks
37 (qval < 1E-05)

Base call quality data from DBCLS SRA