SRX3430138
GSM2870303: ChIP WT Rad21 rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rad21

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
E14 embryonic stem cell
antibody
Rad21
genotype
wild type
cell line
E14 embryonic stem cell

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
All libraries were constructed using standard illumina TruSeq LT library prep.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
30702055
Reads aligned (%)
5.4
Duplicates removed (%)
14.1
Number of peaks
91 (qval < 1E-05)

mm9

Number of total reads
30702055
Reads aligned (%)
5.4
Duplicates removed (%)
15.0
Number of peaks
99 (qval < 1E-05)

Base call quality data from DBCLS SRA