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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Ctcf
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
SRX3430129
GSM2870294: ChIP dCas9 CTCF; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Ctcf
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
source_name
DKO cell, E14 embryonic stem cell with MLL3/4 double knock out
antibody
CTCF
genotype
MLL3/4 double knock out
cell line
E14 embryonic stem cell
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
All libraries were constructed using standard illumina TruSeq LT library prep.
Sequencing Platform
instrument_model
Illumina HiSeq 4000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
34139249
Reads aligned (%)
94.0
Duplicates removed (%)
24.2
Number of peaks
60534 (qval < 1E-05)
mm9
Number of total reads
34139249
Reads aligned (%)
93.8
Duplicates removed (%)
24.3
Number of peaks
60537 (qval < 1E-05)
Base call quality data from
DBCLS SRA