SRX3427396
GSM2867769: Ctcf NP ChIP-Seq 1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Embryo
Cell type
Nephron progenitor
NA
NA

Attributes by original data submitter

Sample

source_name
nephron progenitor cells
strain
CFW
developing stage
E16.5
antibody
CTCF (D31H2) XP® Rabbit mAb

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Qiagen MinElute PCR Purification kit (#28004) Rubicon ThruPlex genomic DNA library kit (#R400429)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
30938850
Reads aligned (%)
95.6
Duplicates removed (%)
40.0
Number of peaks
12742 (qval < 1E-05)

mm9

Number of total reads
30938850
Reads aligned (%)
95.4
Duplicates removed (%)
40.1
Number of peaks
12659 (qval < 1E-05)

Base call quality data from DBCLS SRA