Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Adult
Cell type
Brains
NA
NA

Attributes by original data submitter

Sample

source_name
Adult Brain
tissue
brain
age
50 Days
genotype
DGRP-551

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Adult flies were anesthetised by placing them in ice cold glass dishes, heads were removed and brains were dissected removing any cuticle, retina and trachea. Dissected brains were placed in ice cold PBS. Two brains were used for each ATAC-seq reaction, one male and one female. ATAC-seq was performed as previously described in Davie and Jacobs et al 2015 (PLOS Genetics) ATAC-seq

Sequencing Platform

instrument_model
Illumina HiSeq 4000

dm6

Number of total reads
8040872
Reads aligned (%)
65.9
Duplicates removed (%)
7.7
Number of peaks
3806 (qval < 1E-05)

dm3

Number of total reads
8040872
Reads aligned (%)
66.2
Duplicates removed (%)
6.0
Number of peaks
3453 (qval < 1E-05)

Base call quality data from DBCLS SRA