Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryo
cell type
embryonic stem cell , blastocyst derived
genotype
Mll1fl/fl; Cre-ER TM
strain
C57BL/6J
agent
untreated

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP experiments were performed using ~4µg a-Mll1 antibody for 1E8 cells ; ~2ug a-H3K4me1/2/3 for 2E7 cells according to standard protocols. Crosslinking of the cells was performed with 1% PFA for 10 minutes, while ChIPed DNA was purified by Qiaquick PCR purification Kit (Qiagen). Libraries were prepared with the Illumina TruSeq protocol according to the manufacturer's protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
91262032
Reads aligned (%)
90.2
Duplicates removed (%)
53.9
Number of peaks
693 (qval < 1E-05)

mm9

Number of total reads
91262032
Reads aligned (%)
90.0
Duplicates removed (%)
53.9
Number of peaks
761 (qval < 1E-05)

Base call quality data from DBCLS SRA