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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: Intestinal epithelium
ATCC
MeSH
RIKEN BRC
SRX3424193
GSM2865604: D7 IEL ATAC-seq rep2; Mus musculus; ATAC-seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Digestive tract
Cell type
Intestinal epithelium
NA
NA
Attributes by original data submitter
Sample
source_name
D7 IEL P14
strain
C57BL/6
age
6-16 Weeks
tissue
Small Intestine Epithelium
cell population
CD8+ T cell
Sequenced DNA Library
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Single cell suspensions from the spleen, epithelium, or kidney of the small intestine were sorted by FACS. The ATAC-Seq library was generated by Nextera sample prep kit (Illumina).
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
19346253
Reads aligned (%)
92.8
Duplicates removed (%)
31.1
Number of peaks
24519 (qval < 1E-05)
mm9
Number of total reads
19346253
Reads aligned (%)
92.7
Duplicates removed (%)
31.2
Number of peaks
24525 (qval < 1E-05)
Base call quality data from
DBCLS SRA