SRX3424192
GSM2865603: D7 IEL ATAC-seq rep1; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Digestive tract
Cell type
Intestinal epithelium
NA
NA

Attributes by original data submitter

Sample

source_name
D7 IEL P14
strain
C57BL/6
age
6-16 Weeks
tissue
Small Intestine Epithelium
cell population
CD8+ T cell

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Single cell suspensions from the spleen, epithelium, or kidney of the small intestine were sorted by FACS. The ATAC-Seq library was generated by Nextera sample prep kit (Illumina).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21713676
Reads aligned (%)
93.5
Duplicates removed (%)
20.1
Number of peaks
17741 (qval < 1E-05)

mm9

Number of total reads
21713676
Reads aligned (%)
93.4
Duplicates removed (%)
20.2
Number of peaks
17730 (qval < 1E-05)

Base call quality data from DBCLS SRA