Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Spleen

Cell type

Spleen

MeSH Description

An encapsulated lymphatic organ through which venous blood filters.

Sample

source_name

D7 Spleen P14

strain

C57BL/6

age

6-16 Weeks

tissue

Spleen

cell population

CD8+ T cell

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

Single cell suspensions from the spleen, epithelium, or kidney of the small intestine were sorted by FACS. The ATAC-Seq library was generated by Nextera sample prep kit (Illumina).

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

25905961

Reads aligned (%)

92.3

Duplicates removed (%)

28.7

Number of peaks

15819 (qval < 1E-05)

mm9

Number of total reads

25905961

Reads aligned (%)

92.2

Duplicates removed (%)

28.7

Number of peaks

15800 (qval < 1E-05)