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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27ac
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
SRX3423879
GSM2865282: AOS-14 E-n H3K27ac; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27ac
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
source_name
AOS-14_E-n
strain background
C57BL/6
cell line
AOS-14
cell type
mouse haploid embryonic stem cells
chip antibody
H3K27ac (Abcam, ab4729)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from nuclei and then fragmented with Mnase treatment. Histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit
Sequencing Platform
instrument_model
HiSeq X Ten
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
18400096
Reads aligned (%)
92.4
Duplicates removed (%)
12.0
Number of peaks
135 (qval < 1E-05)
mm9
Number of total reads
18400096
Reads aligned (%)
92.3
Duplicates removed (%)
12.0
Number of peaks
106 (qval < 1E-05)
Base call quality data from
DBCLS SRA