SRX342309
Histone H3K27ac ChIP-Seq of Fetal Spinal Cord

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Neural
Cell type
Fetal Spinal Cord
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Spinal Cord
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-24832
DONOR_AGE
day 108
DONOR_HEALTH_STATUS
NA
DONOR_SEX
Female
DONOR_ETHNICITY
NA
BioSampleModel
Generic
sample_term_id
UBERON_0002240

Sequenced DNA Library

library_name
Histone.DS23458
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Single read - Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24773676
Reads aligned (%)
82.9
Duplicates removed (%)
4.3
Number of peaks
24456 (qval < 1E-05)

hg19

Number of total reads
24773676
Reads aligned (%)
82.7
Duplicates removed (%)
4.4
Number of peaks
24389 (qval < 1E-05)

Base call quality data from DBCLS SRA