Antigen

Antigen Class

No description

Antigen

NA

Cell type

Cell type Class

Others

Cell type

Urinary Bladder

MeSH Description

A musculomembranous sac along the URINARY TRACT. URINE flows from the KIDNEYS into the bladder via the ureters (URETER), and is held there until URINATION.

Sample

MOLECULE

genomic DNA

DISEASE

None

BIOMATERIAL_PROVIDER

Shin Lin, Stanford University

BIOMATERIAL_TYPE

Primary Tissue

TISSUE_TYPE

Bladder

TISSUE_DEPOT

N/A

COLLECTION_METHOD

Autopsy

DONOR_ID

STL001

DONOR_AGE

3

DONOR_HEALTH_STATUS

healthy, no prior medical history (NO diabetes, hypertension, coronary artery disease, cancer)

DONOR_SEX

Male

DONOR_ETHNICITY

Caucasian and African American

sample_term_id

UBERON_0001255

Sequenced DNA Library

library_name

CY329

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

See http://bioinformatics-renlab.ucsd.edu/RenLabLibraryProtocolV1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

26986681

Reads aligned (%)

96.1

Duplicates removed (%)

6.4

Number of peaks

23516 (qval < 1E-05)

hg19

Number of total reads

26986681

Reads aligned (%)

95.2

Duplicates removed (%)

7.9

Number of peaks

23503 (qval < 1E-05)