Antigen

Antigen Class

No description

Antigen

NA

Cell type

Cell type Class

Others

Cell type

Adrenal Glands

MeSH Description

A pair of glands located at the cranial pole of each of the two KIDNEYS. Each adrenal gland is composed of two distinct endocrine tissues with separate embryonic origins, the ADRENAL CORTEX producing STEROIDS and the ADRENAL MEDULLA producing NEUROTRANSMITTERS.

Sample

MOLECULE

genomic DNA

DISEASE

None

BIOMATERIAL_PROVIDER

Shin Lin, Stanford University

BIOMATERIAL_TYPE

Primary Tissue

TISSUE_TYPE

Adrenal Gland

TISSUE_DEPOT

N/A

COLLECTION_METHOD

Autopsy

DONOR_ID

STL003

DONOR_AGE

34

DONOR_HEALTH_STATUS

polysubstance abuse (NO diabetes, hypertension, coronary artery disease, cancer)

DONOR_SEX

male

DONOR_ETHNICITY

Caucasian

sample_term_id

UBERON_0002369

Sequenced DNA Library

library_name

AY833

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

See http://bioinformatics-renlab.ucsd.edu/RenLabLibraryProtocolV1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

38577828

Reads aligned (%)

95.8

Duplicates removed (%)

3.4

Number of peaks

1551 (qval < 1E-05)

hg19

Number of total reads

38577828

Reads aligned (%)

95.0

Duplicates removed (%)

5.3

Number of peaks

1480 (qval < 1E-05)