Antigen

Antigen Class

No description

Antigen

NA

Cell type

Cell type Class

Gonad

Cell type

Ovary

MeSH Description

The reproductive organ (GONADS) in female animals. In vertebrates, the ovary contains two functional parts: the OVARIAN FOLLICLE for the production of female germ cells (OOGENESIS); and the endocrine cells (GRANULOSA CELLS; THECA CELLS; and LUTEAL CELLS) for the production of ESTROGENS and PROGESTERONE.

Sample

MOLECULE

genomic DNA

DISEASE

iron deficiency, bipolar

BIOMATERIAL_PROVIDER

Shin Lin, Stanford University

BIOMATERIAL_TYPE

Primary Tissue

TISSUE_TYPE

Ovary

TISSUE_DEPOT

N/A

COLLECTION_METHOD

Autopsy

DONOR_ID

STL002

DONOR_AGE

30

DONOR_HEALTH_STATUS

iron deficiency, bipolar disease (NO diabetes, hypertension, coronary artery disease, cancer)

DONOR_SEX

Female

DONOR_ETHNICITY

Caucasian

sample_term_id

UBERON_0000992

Sequenced DNA Library

library_name

AY836

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

See http://bioinformatics-renlab.ucsd.edu/RenLabLibraryProtocolV1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

37065216

Reads aligned (%)

96.2

Duplicates removed (%)

2.7

Number of peaks

1047 (qval < 1E-05)

hg19

Number of total reads

37065216

Reads aligned (%)

95.5

Duplicates removed (%)

4.3

Number of peaks

1101 (qval < 1E-05)