Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Epidermis
Cell type
Dermal fibroblast
NA
NA

Attributes by original data submitter

Sample

source_name
human dermal fibroblasts (HDFs)
chip antibody
Non-immune IgGs
cell type
dermal fibroblast

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immune-precipitation was carried from 15 × 10^6 HDFs as for the ChIP assay with anti-AR antibody versus nonimmune IgGs. The bead-bound chromatin was tagged with Tn5 transposase (Nextera DNA Sample Prep kit, Illumina). The “tagmented” chromatin was de-cross-linked, purified, and amplified (20 cycles) using tag-specific primers. The amplified products were subjected to size selection (200-400 bp) and sequenced using Illumina Hi-seq.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
36306404
Reads aligned (%)
77.2
Duplicates removed (%)
70.6
Number of peaks
680 (qval < 1E-05)

hg19

Number of total reads
36306404
Reads aligned (%)
76.2
Duplicates removed (%)
72.0
Number of peaks
580 (qval < 1E-05)

Base call quality data from DBCLS SRA