Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Kidney

Cell type

Patski

Tissue

Kidney

Lineage

cellLine

Description

Mouse Embryonic Kidney Fibroblast. As described in Lingenfelter et al., 1998 (Nat Genet. 1998 18:212-3) and Yang et al., 2010 (Genome Res. 2010 20:614-22), PATSKI is a female interspecific mouse fibroblast that was derived from the embryonic kidney of an M.spretus x C57BL/6J hybrid mouse such that the C57Bl/6J X chromosome (maternal) is always the inactive X. This is an adherent cell line.

Sample

source_name

Patski cells

cell line

Patski

cell type

Fibroblasts derived from hybrid embryonic kidney

strain/background

BL6/spretus

genotype/variation

wild-type

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

ATAC-seq was done on WT, Del-hinge, Inv-Dxz4 and 2-4-clone Patski cells using a published method.

Sequencing Platform

instrument_model

NextSeq 500

mm10

Number of total reads

330510630

Reads aligned (%)

83.2

Duplicates removed (%)

76.0

Number of peaks

35456 (qval < 1E-05)

mm9

Number of total reads

330510630

Reads aligned (%)

83.2

Duplicates removed (%)

76.0

Number of peaks

35479 (qval < 1E-05)