Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Adipocyte

Cell type

Brown preadipocytes

NA

NA

Sample

source_name

MyoD-induced mouse brown preadipocytes, WT, H3K4me3 ChIP

strain/background

C57BL/6J

genotype

MLL3-/-

age

E18.5 embryos

cell type

MyoD-induced immortalized brown preadipocytes

chip antibody

H3K4me3

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei, and protein-DNA complexes were isolated with antibody (MyoD: Santa Cruz Biotechnology, sc-760 (lot: H2107); H3K4me1: abcam, ab8895 (lot: GR61280-1); H3K4me3: Millipore, 17-614 (lot: 2109590); H3K27ac: abcam, ab4729 (lot: GR81163-1); homemade MLL4). Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

34369979

Reads aligned (%)

86.7

Duplicates removed (%)

31.2

Number of peaks

29355 (qval < 1E-05)

mm9

Number of total reads

34369979

Reads aligned (%)

86.6

Duplicates removed (%)

31.3

Number of peaks

29335 (qval < 1E-05)