SRX3413350
GSM2863022: TH1 CD4+ T cell biological replicate 2; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Primary T cell sorted from peripheral blood
cell type
TH1 CD4+ T cell
gender
male
disease status
healthy

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Tn5 transposition. Nextera

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25609158
Reads aligned (%)
91.5
Duplicates removed (%)
35.0
Number of peaks
13724 (qval < 1E-05)

hg19

Number of total reads
25609158
Reads aligned (%)
91.0
Duplicates removed (%)
35.4
Number of peaks
13684 (qval < 1E-05)

Base call quality data from DBCLS SRA