Antigen

Antigen Class

Unclassified

Antigen

Unclassified

Cell type

Cell type Class

Digestive tract

Cell type

HCT 116

Primary Tissue

Colon

Tissue Diagnosis

Carcinoma

Sample

source_name

HCT116 cells

tissue

HCT116 cells

genotype

KDM5A KO

ip

Input

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

DNA was extracted by Qiagen PCR purification kit Libraries were prepared from the ChIP material using the ChIP-Seq Sample Prep Kit (Illumina) and sequenced on Illumina HiSeq 2000 (50-bp reads). 

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

25786795

Reads aligned (%)

99.5

Duplicates removed (%)

2.3

Number of peaks

534 (qval < 1E-05)

hg19

Number of total reads

25786795

Reads aligned (%)

99.0

Duplicates removed (%)

3.1

Number of peaks

703 (qval < 1E-05)