Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Neural
Cell type
KELLY
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
Chromatin IP against H3K27ac in DMSO KELLY
cell line
KELLY
cell type
Neuroblastoma
input
KELLY_DMSO_WCE
treatment
0.1% DMSO for 3HR
growth protocol
10% FBS, DMEM
barcode
TGGGTTTC
antibody
H2K27ac
antibody maker
abcam
antibody catalog number
ab4729

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared using Tn5 enzyme and amplified using 2x NEBNext HiFi master mix. ChIPmentation (Schmidl et a., 2015; PMC4589892)

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
46802824
Reads aligned (%)
97.5
Duplicates removed (%)
23.9
Number of peaks
6639 (qval < 1E-05)

hg19

Number of total reads
46802824
Reads aligned (%)
96.7
Duplicates removed (%)
24.7
Number of peaks
6302 (qval < 1E-05)

Base call quality data from DBCLS SRA