SRX3407604
GSM2861495: sscon2 comp C; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Kidney
Cell type
hTERT-HME1
Primary Tissue
Breast
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
hTert-HME1 cell line
tissue
hTert-HME1 cell line
sirna
control-2
media
+EGF (complete)
passages
6
biological replicate
C

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
AllPrep (Qiagen) ATAC-seq per Buenrostro et al. Nature Methods 2013

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
45866673
Reads aligned (%)
26.0
Duplicates removed (%)
2.7
Number of peaks
375 (qval < 1E-05)

hg19

Number of total reads
45866673
Reads aligned (%)
25.7
Duplicates removed (%)
2.9
Number of peaks
265 (qval < 1E-05)

Base call quality data from DBCLS SRA