ChIP-Atlas: SRX3405628

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: ATAC-Seq
Antigen: ATAC-Seq

Cell type

Cell type Class: Blood
Cell type: CD4+ T cells
NA: NA

Attributes by original data submitter

Sample

source_name: CD4 SP thymocytes
cell type: CD4 SP thymocytes
strain: C57BL/6J
age: 9 weeks old
genotype: wild type

Sequenced DNA Library

library_strategy: ATAC-seq
library_source: GENOMIC
library_selection: other
library_construction_protocol: Libraries were prepared following Buenrostro et al, 2013 Nat Methods 10:1213-1218.

Sequencing Platform

instrument_model: Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 30931833
Reads aligned (%): 67.7
Duplicates removed (%): 27.3
Number of peaks: 19099 (qval < 1E-05)

mm9

Number of total reads: 30931833
Reads aligned (%): 67.7
Duplicates removed (%): 27.3
Number of peaks: 19065 (qval < 1E-05)

Base call quality data from DBCLS SRA