Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Blood

Cell type

Thymocytes

MeSH Description

HEMATOPOIETIC PROGENITOR CELLS that have migrated to the THYMUS where they differentiate into T-LYMPHOCYTES. Thymocytes are classified into maturational stages based on the expression of CELL SURFACE ANTIGENS.

Sample

source_name

DN thymocytes

cell type

DN thymocytes

strain

C57BL/6J

age

9 weeks old

genotype

wild type

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

Libraries were prepared following Buenrostro et al, 2013 Nat Methods 10:1213-1218.

Sequencing Platform

instrument_model

Illumina HiSeq 4000

mm10

Number of total reads

40129614

Reads aligned (%)

61.9

Duplicates removed (%)

23.5

Number of peaks

33408 (qval < 1E-05)

mm9

Number of total reads

40129614

Reads aligned (%)

61.9

Duplicates removed (%)

23.6

Number of peaks

33392 (qval < 1E-05)