Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Kmt2d

Cell type

Cell type Class
Adipocyte
Cell type
Brown preadipocytes
NA
NA

Attributes by original data submitter

Sample

source_name
mouse brown preadipocytes, MLL4 KO, MLL4 ChIP
strain/background
C57BL/6J
genotype/variation
MLL3-/-;MLL4-/-
age
E18.5 embryos
cell type
immortalized brown preadipocytes
chip antibody
MLL4

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei, and MLL4-DNA complexes were isolated with homemade MLL4 antibody. Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
30889355
Reads aligned (%)
75.9
Duplicates removed (%)
26.1
Number of peaks
17209 (qval < 1E-05)

mm9

Number of total reads
30889355
Reads aligned (%)
75.7
Duplicates removed (%)
26.2
Number of peaks
17034 (qval < 1E-05)

Base call quality data from DBCLS SRA