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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
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For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Kmt2d
wikigenes
PDBj
CellType: Brown preadipocytes
ATCC
MeSH
RIKEN BRC
SRX339722
GSM1215806: MLL4 ChIPSeq D7 MLL4 KO; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Kmt2d
Cell type
Cell type Class
Adipocyte
Cell type
Brown preadipocytes
NA
NA
Attributes by original data submitter
Sample
source_name
mouse brown preadipocytes, MLL4 KO, MLL4 ChIP
strain/background
C57BL/6J
genotype/variation
MLL3-/-;MLL4-/-
age
E18.5 embryos
cell type
immortalized brown preadipocytes
chip antibody
MLL4
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei, and MLL4-DNA complexes were isolated with homemade MLL4 antibody. Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
30889355
Reads aligned (%)
75.9
Duplicates removed (%)
26.1
Number of peaks
17209 (qval < 1E-05)
mm9
Number of total reads
30889355
Reads aligned (%)
75.7
Duplicates removed (%)
26.2
Number of peaks
17034 (qval < 1E-05)
Base call quality data from
DBCLS SRA