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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: SW 620
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX3394274
GSM2857649: SW620 H3K4me3; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Digestive tract
Cell type
SW 620
Primary Tissue
unresolved
Tissue Diagnosis
unresolved
Attributes by original data submitter
Sample
source_name
SW620 cell line
chip antibody
H3K4me3 (Millipore Cat. No. 07-473)
tumor stage
Dukes' type C, colorectal adenocarcinoma
treatment
none
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-sequencing libraries were prepared by using the NEBNext Ultra DNA Library Prep Kit for Illumina (NEB Cat. No. E7370), according to the manufacturer's instructions. The sequencing was performed by Hiseq1500 (Illumina).
Sequencing Platform
instrument_model
Illumina HiSeq 1500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
14215115
Reads aligned (%)
98.4
Duplicates removed (%)
8.6
Number of peaks
21461 (qval < 1E-05)
hg19
Number of total reads
14215115
Reads aligned (%)
98.0
Duplicates removed (%)
9.1
Number of peaks
21712 (qval < 1E-05)
Base call quality data from
DBCLS SRA