SRX3384714
GSM2850430: BM iLS H3K9me3 day4 rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Blood
Cell type
Leukocyte stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
bone marrow induced leukocyte stem
strain
C57BL/6
chip antibody
H3K9me3 antibody (#MABI0308, Medical & Biological Laboratories)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA was isolated using QIAGEN All-prep kit. Library was prepared according to Illumina TruSeq protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
40980108
Reads aligned (%)
96.5
Duplicates removed (%)
38.1
Number of peaks
883 (qval < 1E-05)

mm9

Number of total reads
40980108
Reads aligned (%)
95.8
Duplicates removed (%)
37.9
Number of peaks
995 (qval < 1E-05)

Base call quality data from DBCLS SRA