SRX3384708
GSM2850424: BM iLS H3K9me3 day1 rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Blood
Cell type
Leukocyte stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
bone marrow induced leukocyte stem
strain
C57BL/6
chip antibody
H3K9me3 antibody (#MABI0308, Medical & Biological Laboratories)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA was isolated using QIAGEN All-prep kit. Library was prepared according to Illumina TruSeq protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
42495035
Reads aligned (%)
95.3
Duplicates removed (%)
47.5
Number of peaks
1052 (qval < 1E-05)

mm9

Number of total reads
42495035
Reads aligned (%)
94.6
Duplicates removed (%)
47.3
Number of peaks
1132 (qval < 1E-05)

Base call quality data from DBCLS SRA