Antigen

Antigen Class

TFs and others

Antigen

Rel

Cell type

Cell type Class

Blood

Cell type

Dendritic Cells

MeSH Description

ANTIGEN-PRESENTING CELLS of dendritic cell morphology found in the LYMPH NODES and other lymphoid tissues.

Sample

source_name

dendritic cells from the spleen

cell type

CD8-positive dendritic cell line

stimulation

none

chip antibody

cREL (sc-71x)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP was performed as previously described (Daniel et al. Genes Dev. 2014) Indexed cDNA libraries were prepared from 1-10 ng genomic DNA using TruSeq ChIP Sample Preparation kit (Illumina).

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

22245141

Reads aligned (%)

98.0

Duplicates removed (%)

17.1

Number of peaks

305 (qval < 1E-05)

mm9

Number of total reads

22245141

Reads aligned (%)

97.8

Duplicates removed (%)

17.1

Number of peaks

361 (qval < 1E-05)