Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic cortex
age
E17.5
strain
C57BL/6J
genotype/variation
BAF dcKO_hGFAP-Cre
chip antibody
H3K4me2 (Millipore 07-449)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA was isolated using Rneasy kit from Qiagen. Chromatin immunoprecipitation was performed using home-made protocol. Libraries for ChIP-Seq were prepared using NEBNext Ultra DNA Library Preparation Kit for Illumina. Libraries for RNA-Seq were prepared using Illumina TruSeq RNA Sample Preparation v2 Kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
33270706
Reads aligned (%)
70.8
Duplicates removed (%)
87.3
Number of peaks
805 (qval < 1E-05)

mm9

Number of total reads
33270706
Reads aligned (%)
70.5
Duplicates removed (%)
87.5
Number of peaks
813 (qval < 1E-05)

Base call quality data from DBCLS SRA