SRX337569
GSM1213462: Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
p190 Bcr-Abl immortalized progenitor B cells
strain
C57BL/6
tissue
Embryonic fetal liver
developmental stage
Progenitor B cells
chip antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sonicated chromatin fragments were precipitated with streptavidin conjugated magnetic beads Libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
81330478
Reads aligned (%)
97.5
Duplicates removed (%)
11.4
Number of peaks
790 (qval < 1E-05)

mm9

Number of total reads
81330478
Reads aligned (%)
97.2
Duplicates removed (%)
11.3
Number of peaks
919 (qval < 1E-05)

Base call quality data from DBCLS SRA