SRX337495
PU.1 ChIP-seq NC

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Neural
Cell type
BV-2
Primary Tissue
Brain
Tissue Diagnosis
Unknown

Attributes by original data submitter

Sample

investigation_type
eukaryote
cell_line
BV-2
cell_type
Microglia
strain
C57BL/6
isolate
Microglia BV-2 cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
13296648
Reads aligned (%)
61.8
Duplicates removed (%)
7.5
Number of peaks
23254 (qval < 1E-05)

mm9

Number of total reads
13296648
Reads aligned (%)
61.7
Duplicates removed (%)
7.6
Number of peaks
23245 (qval < 1E-05)

Base call quality data from DBCLS SRA