Antigen

Antigen Class

TFs and others

Antigen

TP63

Cell type

Cell type Class

Digestive tract

Cell type

TE-5

Primary Tissue

Esophagus

Tissue Diagnosis

Carcinoma Squamous Cell

Sample

source_name

TE5

cell line

TE5

cell type

Esophageal squamous carcinoma cells

chip antibody

TP63 [sc-8431x or sc-8344 (Santa Cruz Biotechnologies)]

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Standard Illumina library preparation protocol

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

34692379

Reads aligned (%)

97.7

Duplicates removed (%)

15.4

Number of peaks

1051 (qval < 1E-05)

hg19

Number of total reads

34692379

Reads aligned (%)

96.8

Duplicates removed (%)

17.0

Number of peaks

1084 (qval < 1E-05)