Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP63

Cell type

Cell type Class
Digestive tract
Cell type
TE-5
Primary Tissue
Esophagus
Tissue Diagnosis
Carcinoma Squamous Cell

Attributes by original data submitter

Sample

source_name
TE5
cell line
TE5
cell type
Esophageal squamous carcinoma cells
chip antibody
TP63 [sc-8431x or sc-8344 (Santa Cruz Biotechnologies)]

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Standard Illumina library preparation protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
34692379
Reads aligned (%)
80.4
Duplicates removed (%)
17.0
Number of peaks
1084 (qval < 1E-05)

hg38

Number of total reads
34692379
Reads aligned (%)
82.6
Duplicates removed (%)
15.4
Number of peaks
1051 (qval < 1E-05)

Base call quality data from DBCLS SRA