SRX336517
E12.5 male GCs, H3K4me3 ChIP #2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryo
Cell type
Primordial germ cells
NA
NA

Attributes by original data submitter

Sample

strain
C57BL/6
collection_date
11/30/12
dev_stage
E12.5
sample_type
ChIP-seq H3K4me3
sex
male
tissue_type
germ cell

Sequenced DNA Library

library_name
E12.5_male_K4_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
74908026
Reads aligned (%)
95.5
Duplicates removed (%)
70.7
Number of peaks
19443 (qval < 1E-05)

mm9

Number of total reads
74908026
Reads aligned (%)
95.2
Duplicates removed (%)
70.8
Number of peaks
19495 (qval < 1E-05)

Base call quality data from DBCLS SRA