SRX336250
Activated Erk1/2 Promotes Formation of Chromatin Features Inherent to Developmental Promoters in Mouse Embryonic Stem Cells-WT Ercc3 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

strain
ES Cells
cell_line
ES cells
genotype
wild type
collection_date
2012-10-02
label
Wildtype Ercc3 rep 1
geo_loc_name
USA: NYU
cell_type
ES cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19015744
Reads aligned (%)
81.3
Duplicates removed (%)
16.3
Number of peaks
740 (qval < 1E-05)

mm9

Number of total reads
19015744
Reads aligned (%)
81.1
Duplicates removed (%)
16.4
Number of peaks
763 (qval < 1E-05)

Base call quality data from DBCLS SRA