SRX336243
Activated Erk1/2 Promotes Formation of Chromatin Features Inherent to Developmental Promoters in Mouse Embryonic Stem Cells-Epi d3 Erk2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived epiblast-like cells
NA
NA

Attributes by original data submitter

Sample

strain
ES Cells
cell_line
ES to EpiSc
genotype
wildtype
collection_date
2012-09-11
label
ES to EpiSC differentiation day 3_Erk2
geo_loc_name
USA: NYU
cell_type
ES to EpiSc Day3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31257366
Reads aligned (%)
90.3
Duplicates removed (%)
12.1
Number of peaks
768 (qval < 1E-05)

mm9

Number of total reads
31257366
Reads aligned (%)
90.1
Duplicates removed (%)
12.1
Number of peaks
792 (qval < 1E-05)

Base call quality data from DBCLS SRA