SRX335561
GSM1209645: Input DNA; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic kidney
NA
NA

Attributes by original data submitter

Sample

source_name
E15.5 WT kidney
strain
C57BL
genotype/variation
wild type
age
E15.5
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was extracted from formaldehyde-crosslinked cells and ChIP-ed using anti-p53 antibody sc-6243 (Santa Cruz Biotech; lot# C1609). ChIP DNA was processed into library by following the Illumina ChIP-Seq library construction protocol.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28232021
Reads aligned (%)
99.0
Duplicates removed (%)
14.9
Number of peaks
369 (qval < 1E-05)

mm9

Number of total reads
28232021
Reads aligned (%)
98.9
Duplicates removed (%)
15.0
Number of peaks
398 (qval < 1E-05)

Base call quality data from DBCLS SRA