SRX335439
E14.5 male GCs, H3K4me3 ChIP #1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryo
Cell type
Primordial germ cells
NA
NA

Attributes by original data submitter

Sample

strain
C57BL/6
collection_date
2/5/13
dev_stage
E14.5
sample_type
ChIP-seq H3K4me3
sex
male
tissue_type
germ cell

Sequenced DNA Library

library_name
E14.5_male_K4_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
66492690
Reads aligned (%)
94.8
Duplicates removed (%)
83.7
Number of peaks
2860 (qval < 1E-05)

mm9

Number of total reads
66492690
Reads aligned (%)
94.4
Duplicates removed (%)
83.9
Number of peaks
3081 (qval < 1E-05)

Base call quality data from DBCLS SRA