Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Unclassified

Cell type

Unclassified

NA

NA

Sample

source_name

cells

strain

Mixed (C57BL/6 x 129)

marker

Oct4-GFP+

Stage

Stage 2 (day 6 + 4)

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

Cells were harvested and lysed at various stages of 3c enhanced reprogramming as previously described by Buenrostro et al., 2013. ATAC-Seq libraries were prepared as previously described by Buenrostro et al., 2013.

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

46989042

Reads aligned (%)

92.8

Duplicates removed (%)

20.3

Number of peaks

9570 (qval < 1E-05)

mm9

Number of total reads

46989042

Reads aligned (%)

92.7

Duplicates removed (%)

20.4

Number of peaks

9469 (qval < 1E-05)